Caerfai is a first attempt at simulating chemical reactions. The model is much too simple to be useful for medical research, but it does produce organical molecules. Source is included and offers a nice starting point for similar endevours.
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Metaminine, Two water, amonium and a weird radical
Basically, you see atoms bouncing around rather fast and combining in chemical correct formation, though not always in the most logical way.
One of the worst of my many faults is that I'm too critical of myself.